Cho, Lee, Kim, Shin, and Kim: Four unrecorded species of macrofungi from South Korea

Sung-Eun Cho[1]Dong-Hyeon Lee[2]Eui Kyeong Kim[3]Keum Chul Shin[4]Nam Kyu Kim[5]

Abstract

In 2022, our investigation focused on exploring the macrofungal diversity in South Korea. Through the examination of morphological characteristics and ITS sequences of the rDNA, we successfully identified four unrecorded species (Laccaria striatula, Leotia atrovirens, Malvipezia emileia, Xerula strigosa). Detailed morphological descriptions, accompanied by photographs and molecular phylogenetic analyses were performed.


INTRODUCTION

Macrofungi play important roles in natural ecosystems, adopting saprophytic, parasitic, and symbiotic lifestyle. They encompass ascomycetes and basidiomycetes, which are characterized by conspicuous sporebearing structures that are easily observable [1]. While the worldwide compilation of macrofungi names by the Index fungorum exceeds 20,000, the recorded macrofungi species in Korea amount to approximately 2,100. Among these, 1,800 species were basidiomycetes fungi and 290 species were ascomycetes fungi [2].

In this study, we conducted taxonomic research on the diversity of wild macrofungi in the forests of South Korea. Four previously unrecorded macrofungal species were collected in 2022. Based on taxonomic identification (morphological features and DNA fungal barcodes), two basidiomycete fungi (Laccaria striatula and Xerula strigosa) and two ascomycete fungi (Leotia atrovirens and Malvipezia emileia) were confirmed. Among these, Malvipezia was discovered to be an unknown genus in South Korea.

Four samples were collected during a mycological survey conducted in 2022 to investigate the mushroom diversity. In this study, these collections were examined for morphological identification based on their macroscopic and microscopic characteristics. The dried materials were mounted in distilled water and 5% KOH using a Zeiss Axio Imager A1 microscope (Jena, Germany) and an Axiocam 503 color camera (Jena, Germany). The taxonomic classification of the studied taxa followed the guidelines provided by the Index Fungorum (http://www.indexfungorum.org). Dried specimens were archived at the herbarium of the National Institute of Biological Resources (NIBR), Incheon, South Korea.

For phylogenetic analysis, genomic DNA was extracted from the specimens using the ZR Genomic DNA Tissue MicroPrep kit (Zymo Research, USA). The ITS region was amplified using a universal primer pair (ITS1 and ITS4). PCR amplicons were purified with the QIAquick Purification Kit (Qiagen, Inc.) and sequenced by Macrogen sequencing service (Macrogen Inc., Seoul, Korea). For phylogenetic study, 61 sequences were download from GenBank (Table 1) [3-21]. The dataset was aligned using MAFFT v.7, with all other parameters set to default values. A Maximum Likelihood (ML) tree of the ITS sequences was constructed using RAxML-HPC2 on XSEDE (v. 8.2.4) [22] through the CIPRES Science Gateway [23]. The robustness of the individual branches was assessed by bootstrapping with 1,000 replicates.
Table 1

Specimens of species used in this study and their GenBank accession numbers.

N0320510302-t1.png
Table 1

Specimens of species used in this study and their GenBank accession numbers (continued).

N0320510302-t1-1.png

As a result, the ITS sequences were subjected to an RaxML analysis, resulting in the resolution of the phylogenetic positions of four species (Laccaria striatula, Leotia atrovirens, Malvipezia emileia, Xerula strigosa) (Figs. 1-4). Each species formed well-supported clades in their respective phylogenetic trees. In Laccaria phylogeny (Fig. 1), the Korean collection grouped together with L. striatula. Within the L. striatula clade, this species exhibited three distinct groups, indicating the presence of a species complex, based on ITS sequences. Further studies are required to validate the phylogenetic position of L. striatula. Regarding the Leotia phylogeny (Fig. 2), the Korean specimen was clustered with L. atrovirens group. Based on the phylogenetic analysis, the Korean collection was conclusively identified as L. atrovirens. In Malvipezia phylogeny (Fig. 3), the Korean collection clustered with M. emileia (KJ728715-KJ728717) with 100% BS values. Thus, the phylogenetic tree we constructed was supported by the position of M. emileia. In Xerula phylogeny (Fig. 4), X. strigosa clade was split into two groups. The Korean specimens clustered with X. strigosa from China (KF530556), with 100% BS values. Further studies are required to confirm this differentiation within X. strigosa clade.

Fig. 1

RAxML tree based on ITS sequences of Laccaria striatula. Sequences generated in this study are indicated in bold text.

N0320510302-f1.png
Fig. 2

RAxML tree based on ITS sequences of Leotia atrovirens. Sequences generated in this study are indicated in bold text.

N0320510302-f2.png
Fig. 3

RAxML tree based on ITS sequences of Malvipezia emileia. Sequences generated in this study are indicated in bold text.

N0320510302-f3.png
Fig. 4

RAxML tree based on ITS sequences of Xerula strrgosa. Sequences generated in this study are indicated in bold text.

N0320510302-f4.png

TAXONOMY

Laccaria striatula (Peck) Peck. Bull. N.Y. St. Mus. 157: 93 (1912) [1911] (Figs. 1 and 5)

Basionym. Clitocybe laccata var. striatula Peck 1897 Korean name: Julmunui-jolgakbeoseot (줄무늬졸각버섯); the epithet ʻstriatula’ originates from the Latin term for little stripes (Latin), referring to pattern of the pileus.

Description: Pileus: Diameter ranging from 15 to 40 mm., convex to flattened, with flesh pink to pinkish brown coloration, striated. Lamellae: Adnate, thick, orange-pinkish. Stipe: Colored in shades of orange, pinkish, or brown, finely fibrillose, 20–50 mm × 2–4 mm. Basidia: Clavate-shaped, 4-spored, with dimensions of 53–68 × 12–14.5 μm. Basidiospores: Globose shape, echinulate with spines, measuring 8.012.0 × 9.0–11.5 μm; Q = 0.9–1.3; n = 20. Cheilocystidia rarely observed, filamentous, flexuous. Pileipellis a cutis, hyphae interwoven, cylindrical, bifurcating, clamped. Pileocystidia not observed.

Habitat: Typically found scattered on sand or moss in mixed forest (Pinus koraiensis and Quercus mongolica). Specimen examined: Location: Gangwon-do, Jeongseon-gun, Korea, Coordinates: 37°9ʹ12.3.53ʺN 128°54ʹ24.59ʺE, alt. 1287 m. Collection date: Sep. 22, 2022. Specimen voucher: CKU20220922-10. Remarks. Laccaria striatula is distinguished by its orange-pink to pinkish-brown basidiomata and globose spores with extensive echinulation. The Korean collection have morphologically similar characteristics from specimens of North America (shapes of basidiospores and pileus striations) [24]. This species is the most morphologically similar to L. macrobasidia with size of pileus, basidia, and basidiospore [25]. However, they can be differentiated by the size of stipe (20–50 mm × 2–4 mm vs. 10–50 mm × 0.51.0 mm). In Korea, this species is collected at high elevations (1287 m). Similarly, a collection of L. striatula from the USA (NCBI accession no. KY777385) was collected at a high elevation (1800 m). Therefore, this species may have grown at higher altitudes.
Fig. 5

A, B: Laccaria striatula. C, D: Basidiospores.

N0320510302-f5.png
Leotia atrovirens Pers. Mycol. eur. (Erlanga) 1:202 (1822) (Figs. 2 and 6) Korean name: jinnoksaek-dugeonbeoseot (진녹색두건버섯); the epithet “atrovirens” derives from the Latin term for dark green, referring to the color of the ascomata. Description: Ascomata: Gelatinous, irregularly rounded or flattened, measuring 6-15 mm in width, with a yellowish to greenish hue, and appearing smooth or furrowed. Stipe: Typically 15-45 mm tall, pale green, and usually roughened. Asci: 8-spored, cylindrical, 120–168 × 7.0–10 μm, tapering towards a long base. Ascospores: Hyaline, ellipsoid, slightly curved, guttulate, measuring 18.0–24.0 × 5.0–6.0 μm; Q = 3.6–4.8; n = 20. Habitat: Found in deciduous forests. Specimen examined: Location: Gangwon-do, Jeongseon-gun, Korea, Coordinates: 37°09ʹ02.49ʺN 128° 54ʹ29.07ʺE, alt: 1316 m. Collection date: September 22, 2022. Specimen voucher: CKU20220922-05. Remarks. According to a previous study [6], L. atrovirens may be L. lubrica parasitized by an asexual fungus, resulting in color change. However, phylogenetic analyses have shown that they are not monophyletic [26]. The constructed phylogenetic tree (Fig. 2) supports the results of this study. Malvipezia emileia (Cooke) Van Vooren, Ascomycete.org 12(4):188 (2020) (Figs. 3 and 7) Basionym: Peziza emileia Cooke 1879 Korean name: Naseon-damjasaekjubalbeoseot (나선담자색주발버섯); derived from the spiralshaped apothecia. The newly designated Korean genus name is Damjasaekjubalbeoseot (담자색주발버섯), derived from the characteristics of light purple apothecia. Description: Apothecia: Cup or spiral shaped, with diameters ranging from 35 to 75 mm. The flesh was waxy, fragile, whitish, weakly brownish, and layered. Asci: Subcylindrical, hyaline, measuring 250–330 × 16.5–18 μm, and containing eight-spores. Ascospores: Ellipsoid-shaped, measuring 16.0–23.0 × 9.0–12.0 μm; Q = 1.7–2.5; n = 20; with warts in the form of irregular ridges. Paraphyses: Subcylindrical, 2.8−4.0 μ m wide at the base, 7–8 μm at the apex, simple, and septate at the tip.

Habitat: Found on the ground of the forests.

Specimen examined: Location: Gangwon-do, Wonju-si, Korea. Coordinates: 37°21ʹ47.75ʺN

Fig. 6

A: Leotia atrovirens. B: Ascospores. C: Ascus.

N0320510302-f6.png
128°1ʹ19.16ʺE, alt. 452 m. Collection date: Sep. 15, 2022. Specimen voucher: CKU20220915-10. Remarks. There are four species have been recorded in the genus Malvipezia (M. emileia, M. howsei, M. invidula, M. pauli; IndexFungorum.org). Of those, M. emileia is morphologically similar to M. howsei with apothecia color (whitish or weakly brownish vs. brownish-violaceous with slight yellowish), spore size (M. emileia is slightly longer than M. howsei), and ornamentation (warts of M. emileia are slightly larger than M. howsei) [14]. This characteristic of M. emileia is similar to those observed in this study. However, M. howsei contains two distinct clades through this study (Fig. 3). Therefore, more sequences are needed to understand the relationships among this taxon. The genus Peziza sensu lato is further split into four genera (Peziza sensu stricto, Geoscypha, Malvipezia and Phylloscypha), phylogenetically [27]. In Korea, the genus Peziza is also known as Peziza sensu lato. Therefore, a taxonomic study of Peziza sensu lato is needed based on the current research. In the present study, Malvipezia was recorded for the first time in South Korea. Xerula strigosa Zhu L. Yang, L. Wang & G.M. Muell. 2008 (Figs. 4 and 8) Korean name: Ganeunteol-Ppuribeoseot (가는털뿌리버섯); derived from the shape of lean stipe. Description: Pileus: 25–45 mm in diameter, convex to plano-convex, light brown to dark brown. The surface is fibrillose or fine scaly, with an umbonate shape and broad depression over the disc. Lamellae: Cream to white, adnate to adnexed, edges entire. Stipe: 60–110 × 3–4 mm, yellowish-brown, centrally located, pubescent, cylindrical to subcylindrical in shape, tapering towards the base, firm. Basidia: 28.535 × 10.0–12.0 µm, 4–spored, clavate, hyaline. Clamp connections absent in all parts of basidiomata. Basidiospores: Ellipsoidal to broadly ellipsoidal, hyaline, pale yellow, measuring 11.0–15.0 × 10.5–12.5 µm; Q = 1.0–1.4; n = 20. Pleurocystidia: 70–125 × 14–30 µm, with a truncate apex, thick-walled mainly at the base. Pileipellis: hymeniform, 45–62 × 15–20 µm, thick-walled. Habitat: Found on litter and soil in coniferous forest.

Specimen examined: Location: Gangwon-do, Wonju-si, Korea. Coordinates: 37°25ʹ12.12ʺN 128°3ʹ13.53ʺE, alt. 322 m. Collection date: Sep. 14, 2022. Specimen voucher: CKU20220914-14.

Remarks. The description based on the Korean collection is in accordance with the holotype description [28]. Xerula strigosa has been documented in both China and Pakistan as well. Hence, considering its morphological features and molecular analysis, this represents the species’ third recorded occurrence.

Fig. 7

A: Malvipezia emileia. B, C: Asci containing ascospores. D: Paraphyses.

N0320510302-f7.png
Fig. 8

A, B: Xerula strigosa. C: Pleurocystidium. D: Pileipellis. E: Basidia. F: Basidiospores.

N0320510302-f8.png

CONFLICT OF INTERESTS

No potential conflict of interest is reported by the authors.

ACKNOWLEDGEMENTS

This work was supported by a grant from the National Institute of Biological Resources (NIBR) funded by the Ministry of Environment (MOE) of the Republic of Korea. Support was also provided by the Park Resources Survey Project of Chiaksan National Park, Korea National Park Research Institute of Korea National Park Service (KNPS).

REFERENCES

1 Mueller GM, Schmit JP, Leacock PR. et al. Global diversity and distribution of macrofungi. Biodivers Conserv 2007;16:37–48.  

2 NIBR. 2022. National Institute of Biological Resources. Available at: https://kbr.go.kr/ [Date accessed: 23 March 2022]  

3 Garbelotto MM, Baker LJ, Smith A, Robich G, Osmundson T, Mizzan L. Filling gaps in biodiversity knowledge for macrofungi: contributions and assessment of an herbarium collection DNA barcode sequencing project. PLoS ONE 2013;8(4):E62419.  

4 Hansen K, Læssøe T, Pfister DH. Phylogenetic diversity in the core group of Peziza inferred from ITS sequences and morphology. Mycol Res 2002;106(8):879-902.  

5 Wilson AW, Hosaka K, Mueller GM. Evolution of ectomycorrhizas as a driver of diversification and biogeographic patterns in the model mycorrhizal mushroom genus Laccaria. New Phytol 2017;213(4): 1862-1873.  

6 Palmer JM, Lindner DL, Volk TJ. Ectomycorrhizal characterization of an American chestnut (Castanea dentata)-dominated community in Western Wisconsin. Mycorrhiza 2008;19(1):2736.  

7 HJ Cho, MS Park, H L, S-Y Oh, AW Wilson, GM Mueller, YW Lim. A systematic revision of the ectomycorrhizal genus Laccaria from Korea. Mycologia 2018;110(5):948-961.  

8 Osmundson TW, Cripps CL, Mueller GM. Morphological and molecular systematics of Rocky Mountain alpine Laccaria. Mycologia 2005;97(5):949-972.  

9 Victoroff CN. Response of ectomycorrhizal fungal fruiting to nitrogen and phosphorus additions in bartlett experimental forest, new Hampshire. Department of Environmental and Forest Biology. Master of Science Degree. State University of New York. 2022. 103 pp.  

10 Wilson AW, Wickett NJ, Grabowski P, Fant J, Borevitz J, Mueller GM. Examining the efficacy of a genotyping-by-sequencing technique for population genetic analysis of the mushroom Laccaria bicolor and evaluating whether a reference genome is necessary to assess homology. Mycologia 2015;107(1):217-226.  

11 Wang R, Herrera M, Xu W, Zhang P, Moreno JP, Colinas C, Yu F. Ethnomycological study on wild mushrooms in Pu'er Prefecture, Southwest Yunnan, China. J Ethnobiol Ethnomed 2022;18(1):55.  

12 Zhong Z, Pfister DH. Phylogenetic relationships among species of Leotia (Leotiales) based on ITS and RPB2 sequences. Mycol Prog 2004;3(3):237-246.  

13 Teasdale SE, Beulke AK, Guy PL, Orlovich DA. Environmental barcoding of the ectomycorrhizal fungus Cortinarius. Fungal Divers 2013;58(1):299-310.  

14 Medardi G, LoBuglio KF, Pfister DH, Lantieri A. Morphological and molecular study of Peziza emileia and P. howsei, two distinct taxa. Mycol Prog 2014;13:1227-1234.  

15 Kucera V, Lizon P, Tomsovsky M. Taxonomic divergence of the green naked-stipe members of the genus Microglossum (Helotiales). Mycologia 2017;109(1):46-54.  

16 Malysheva EF, Kiyashko AA, Malysheva VF, Shikalova EA. A survey of rare species of agaricoid fungi (Basidiomycota) from South Siberia, Russia. Turczaninowia 2022;25(1):52-72.  

17 Vizzini A, Medardi G, Tamm H, Forin N, Ercole E. Study and clarification of Peziza petersii and P. proteana (Ascomycota, Pezizales, Pezizaceae), and the status of the ‘cabbage-head fungus’ (P. proteana f. sparassoides). Mycol Prog 2020;19(5):505-523.  

18 Petersen RH, Hughes KW. The Xerula/Oudemansiella Complex (Agaricales). Nova Hedwig Beih 2010;137:625.  

19 Mueller GM, Wu Q-X, Huang Y-Q, Guo S-Y, Aldana-Gomez R, Vilgalys R. Assessing biogeographic relationships between North American and Chinese macrofungi. J Biogeogr 2001;28(2):271-281.  

20 Lebel T, Catcheside PS. The truffle genus Cribbea (Physalacriaceae, Agaricales) in Australia. Aust Syst Bot 2009;22:39-55.  

21 Qin J, Hao Y-J, Li YC, Feng B, Hao YJ. Paraxerula ellipsospora, a new Asian species of Physalacriaceae. Mycol Prog 2014;13(3):639-647.  

22  Stamatakis A. RAxML version 8: A tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics 2014;30(9):1312-1313.  

23 Miller MA, Pfeiffer W, Schwartz T. "Creating the CIPRES Science Gateway for inference of large phylogenetic trees" in Proceedings of the Gateway Computing Environments Workshop (GCE), 14 Nov. 2010, New Orleans, LA. pp 1–8.  

24 Mueller GM. Laccaria laccata complex in North America and Sweden: Intercollection pairing and morphometric analyses. Mycologia 1991;83(5):578-594.  

25 HJ Cho, H L, MS Park, KH Park, JH Park, YH Cho, CM Kim, YW Lim. Two new species of Laccaria (Agaricales, Basidiomycota) from Korea. Mycobiology 2020;48(4):288-295.  

26 Geoffrey K. An Illustrated Guide to Mushrooms and Other Fungi of North America. Stamford, Connecticut: Lubrecht & Cramer Ltd. 1994. p.178.  

27 Pfister DH, Healy R, Furci G, Mujic A, Nouhra E, Truong C, Smith MEA. A reexamination and realignment of Peziza sensu lato (Pezizomycetes) species in southern South America. Darwiniana nueva serie 2022;10(1):236-281.  

28 Wang Lan, Yang Zhu-Liang, Zhang Li-Fang, Mueller GM. Synopsis and systematic reconsideration of Xerula s. str. (Agaricales). Plant Divers 2008;30(6):631-644.